giny.model.Node类的使用及代码示例

x33g5p2x  于2022-01-25 转载在 其他  
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本文整理了Java中giny.model.Node类的一些代码示例，展示了Node类的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Node类的具体详情如下：
包路径：giny.model.Node
类名称：Node

Node介绍

暂无

代码示例

代码示例来源：origin: cytoscape.coreplugins/psi-mi

/**
 * Create Hashkey for Edges.
 *
 * @param node1 First node.
 * @param node2 Second node.
 * @return HashKey.
 */
private String createEdgeKey(Node node1, Node node2, Interaction interaction) {
  String node1Ident = node1.getIdentifier();
  String node2Ident = node2.getIdentifier();
  String interactionType = getInteractionTypeId(interaction);
  return new String(node1Ident + interactionType + node2Ident);
}

代码示例来源：origin: cytoscape.corelibs/fing

/**
 *  DOCUMENT ME!
 *
 * @param node DOCUMENT ME!
 *
 * @return  DOCUMENT ME!
 */
public int getIndex(Node node) {
  if (node.getRootGraph() == this)
    return node.getRootGraphIndex();
  else
    return 0;
}

代码示例来源：origin: cytoscape/application

if (Cytoscape.getRootGraph().getEdgeCount() != 0) {
  int[] n1Edges = Cytoscape.getRootGraph()
               .getAdjacentEdgeIndicesArray(source.getRootGraphIndex(), true,
                             true, true);
      CyNode edgeSource = (CyNode) edge.getSource();
      if ((edgeTarget.getRootGraphIndex() == target.getRootGraphIndex())
        && (edgeSource.getRootGraphIndex() == source.getRootGraphIndex())) {
        return edge;
        if ((edgeTarget.getRootGraphIndex() == source.getRootGraphIndex())
          && (edgeSource.getRootGraphIndex() == target.getRootGraphIndex())) {
          return edge;
  String edge_name = CyEdge.createIdentifier(source.getIdentifier(),
                        (String) attribute_value,
                        target.getIdentifier());
  edge.setIdentifier(edge_name);

代码示例来源：origin: cytoscape/application

int rootIndex = node.getRootGraphIndex();
GraphView graphView = node_view.getGraphView();
GraphPerspective gp = graphView.getGraphPerspective();
GraphPerspective childGP = node.getGraphPerspective();
  throw new IllegalStateException("Node " + node.getIdentifier()
                  + " has a non-empty array "
                  + " of children-node indices, but, it has no child GraphPerspective");
    NodeView childNV = graphView.getNodeView(childNode.getRootGraphIndex());

代码示例来源：origin: cytoscape.corelibs/fing

GraphPerspectiveNodesHiddenEvent(Object source, Node[] hiddenNodes) {
  super(source);
  m_hiddenNodes = hiddenNodes;
  m_hiddenNodeInx = new int[m_hiddenNodes.length];
  for (int i = 0; i < m_hiddenNodeInx.length; i++)
    m_hiddenNodeInx[i] = m_hiddenNodes[i].getRootGraphIndex();
}

代码示例来源：origin: cytoscape/application

node = Cytoscape.getCyNode(label, true);
  if (nodeLabels.get(idx) != null)
    nodeAttr.setAttribute(node.getIdentifier(), LABEL,
        nodeLabels.get(idx));
  if (nodeNames.get(idx) != null)
    nodeAttr.setAttribute(node.getIdentifier(), NAME, nodeNames
        .get(idx));
  giny_nodes.add(node.getRootGraphIndex());
  nodeIDMap.put(nodes.get(idx), node.getRootGraphIndex());
  gml_id2order.put(nodes.get(idx), idx);
  ((KeyValue) node_root_index_pairs.get(idx)).value = (new Integer(
      node.getRootGraphIndex()));
} else {
  throw new GMLException("GML id " + nodes.get(idx)

代码示例来源：origin: cytoscape.corelibs/fing

/**
 *  DOCUMENT ME!
 *
 * @param source DOCUMENT ME!
 * @param target DOCUMENT ME!
 *
 * @return  DOCUMENT ME!
 */
public int createEdge(Node source, Node target) {
  return createEdge(source, target, source.getRootGraphIndex() != target.getRootGraphIndex());
}

代码示例来源：origin: cytoscape/application

private String buildStringQuery() {
  final StringBuilder builder = new StringBuilder();
  final Set<Node> selectedNodes = Cytoscape.getCurrentNetwork().getSelectedNodes();
  for (Node node : selectedNodes) {
    builder.append(node.getIdentifier() + " ");
  }
  return builder.toString();
}

代码示例来源：origin: cytoscape/application

public int nextInt() {
    if ((nodeArr[index] == null) || (nodeArr[index].getRootGraph() != root))
      throw new IllegalArgumentException();
    return nodeArr[index++].getRootGraphIndex();
  }
},

代码示例来源：origin: cytoscape/application

currentGML.addMapping("id", new GMLNode("" + (-currentNode.getRootGraphIndex())));
String name = currentView.getNode().getIdentifier();
           new GMLNode("" + (-currentEdge.getSource().getRootGraphIndex())));
currentGML.addMapping("target",
           new GMLNode("" + (-currentEdge.getTarget().getRootGraphIndex())));

代码示例来源：origin: cytoscape/application

/**
 * Return the requested Attribute for the given Node
 * @param node the given CyNode
 * @param attribute the name of the requested attribute
 * @return the value for the give node, for the given attribute
 */
public Object getNodeAttributeValue(Node node, String attribute) {
  return getNodeAttributeValue(node.getRootGraphIndex(), attribute);
}

代码示例来源：origin: cytoscape/application

/**
 * Return all the terms in this ontology.<br>
 *
 * @return All ontology terms as Set object.
 */
public Set getTerms() {
  Set<Term> terms = new HashSet<Term>();
  Iterator nodeIt = ontologyGraph.nodesIterator();
  while (nodeIt.hasNext()) {
    final Node node = (Node) nodeIt.next();
    final String id = node.getIdentifier();
    final Term term = new OntologyTerm(node.getIdentifier(), this.name,
                      termAttr.getStringAttribute(id,
                                    OBOTags.DEF.toString()));
    terms.add(term);
  }
  return terms;
}

代码示例来源：origin: cytoscape.corelibs/fing

public int nextInt() {
    if ((nodeArr[index] == null) || (nodeArr[index].getRootGraph() != root))
      throw new IllegalArgumentException();
    return nodeArr[index++].getRootGraphIndex();
  }
},

代码示例来源：origin: cytoscape/application

/**
* Return the requested Attribute for the given Node
* @param node the given CyNode
* @param attribute the name of the requested attribute
* @param value the value to be set
* @return if it overwrites a previous value
*/
public boolean setNodeAttributeValue(Node node, String attribute, Object value) {
  return setNodeAttributeValue(node.getRootGraphIndex(), attribute, value);
}

代码示例来源：origin: cytoscape/application

/**
   * @param nodeView The clicked NodeView
   * @param menu popup menu to add the Bypass menu
   */
  public void addNodeContextMenuItems(NodeView nodeView, JPopupMenu menu) {
    NodeBypass nb = new NodeBypass();

    if (menu == null)
      menu = new JPopupMenu();

    /*
     * Add Node ID as label.
     */
    final String nodeID = nodeView.getNode().getIdentifier();
    final JLabel nodeLabel = new JLabel(nodeID);

    nodeLabel.setForeground(new Color(10, 50, 250, 150));
    nodeLabel.setFont(new Font("SansSerif", Font.BOLD, 18));
    nodeLabel.setBorder(new EmptyBorder(5, 10, 5, 5));
    menu.add(nodeLabel);

    menu.add(nb.addMenu(nodeView.getNode()));
  }
}

代码示例来源：origin: cytoscape.corelibs/fing

/**
 *  DOCUMENT ME!
 *
 * @param parent DOCUMENT ME!
 * @param child DOCUMENT ME!
 *
 * @return  DOCUMENT ME!
 */
public boolean addMetaChild(Node parent, Node child) {
  if ((parent.getRootGraph() != this) || (child.getRootGraph() != this))
    return false;
  return addNodeMetaChild(parent.getRootGraphIndex(), child.getRootGraphIndex());
}

代码示例来源：origin: cytoscape/application

/**
 * Makes nodes request overtime pay.
 * @param networkList a list of cyNetworks
 * @return an integer array containing the indices of nodes in the union
 */
protected static int[] unionizeNodes(List networkList) {
  /*
   * This is the set of nodes that will be in the final merged network
   */
  Set<Integer> nodes = new HashSet<Integer>();
  for (Iterator it = networkList.iterator(); it.hasNext();) {
    CyNetwork currentNetwork = (CyNetwork) it.next();
    for (Iterator nodeIt = currentNetwork.nodesIterator(); nodeIt.hasNext();) {
      nodes.add(new Integer(((Node) nodeIt.next()).getRootGraphIndex()));
    }
  }
  int[] result = new int[nodes.size()];
  int idx = 0;
  for (Iterator nodeIt = nodes.iterator(); nodeIt.hasNext(); idx++) {
    result[idx] = ((Integer) nodeIt.next()).intValue();
  }
  return result;
}

代码示例来源：origin: cytoscape/application

public SetNestedNetworkDialog(JFrame parent, boolean modal, NodeView nodeView) {
  super(parent, "Set Nested Network for " + nodeView.getNode().getIdentifier(), modal);
  init(nodeView);
}

代码示例来源：origin: cytoscape.corelibs/fing

/**
 *  DOCUMENT ME!
 *
 * @param child DOCUMENT ME!
 * @param parent DOCUMENT ME!
 *
 * @return  DOCUMENT ME!
 */
public boolean isMetaParent(Node child, Node parent) {
  if ((child.getRootGraph() != this) || (parent.getRootGraph() != this))
    return false;
  return isNodeMetaParent(child.getRootGraphIndex(), parent.getRootGraphIndex());
}

代码示例来源：origin: cytoscape/application

for (Iterator nodeIt = nodes.iterator(); nodeIt.hasNext(); idx++) {
  Node currentNode = (Node) nodeIt.next();
  result[idx] = currentNode.getRootGraphIndex();

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