org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation.getCoveredText()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
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本文整理了Java中org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation.getCoveredText()方法的一些代码示例，展示了IdentifiedAnnotation.getCoveredText()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。IdentifiedAnnotation.getCoveredText()方法的具体详情如下：
包路径：org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
类名称：IdentifiedAnnotation
方法名：getCoveredText

IdentifiedAnnotation.getCoveredText介绍

暂无

代码示例

代码示例来源：origin: apache/tika

IdentifiedAnnotation annotation = iterator.next();
StringBuilder annotationBuilder = new StringBuilder();
annotationBuilder.append(annotation.getCoveredText());
if (annotationPros != null) {
  for (CTAKESAnnotationProperty property : annotationPros) {

代码示例来源：origin: apache/ctakes

/**
* @param annotation -
* @return the covered text
*/
static private String getCoveredText( final IdentifiedAnnotation annotation ) {
 return annotation.getCoveredText()
    .replace( '\r', ' ' )
    .replace( '\n', ' ' );
}

代码示例来源：origin: apache/ctakes

/**
* @param annotation -
* @return the covered text
*/
static private String getCoveredText( final IdentifiedAnnotation annotation ) {
 return annotation.getCoveredText().replace( '\r', ' ' ).replace( '\n', ' ' );
}

代码示例来源：origin: apache/ctakes

/**
 * Return true if pse belongs to side effects in the side-effect dictionary
 * 
 * @param jcas
 * @param pse potential side effect
 * @return true if satisfies given conditions, else false 
 */
private boolean isInDictionary(JCas jcas, PotentialSideEffect pse) {
  String drug = pse.drug.getCoveredText().toLowerCase().trim();
  
  if(keyDrugMap.containsKey(drug)) {
    Set<String> seSet = sideEffectMap.get(keyDrugMap.get(drug));
    String pseStr = pse.ne.getCoveredText().toLowerCase().trim();
    //exact matching
    if(seSet.contains(pseStr)) return true;
  }
  
  return false;
}

代码示例来源：origin: org.apache.ctakes/ctakes-side-effect

/**
 * Return true if pse belongs to side effects in the side-effect dictionary
 * 
 * @param jcas
 * @param pse potential side effect
 * @return true if satisfies given conditions, else false 
 */
private boolean isInDictionary(JCas jcas, PotentialSideEffect pse) {
  String drug = pse.drug.getCoveredText().toLowerCase().trim();
  
  if(keyDrugMap.containsKey(drug)) {
    Set<String> seSet = sideEffectMap.get(keyDrugMap.get(drug));
    String pseStr = pse.ne.getCoveredText().toLowerCase().trim();
    //exact matching
    if(seSet.contains(pseStr)) return true;
  }
  
  return false;
}

代码示例来源：origin: org.apache.ctakes/ctakes-relation-extractor

static String format(IdentifiedAnnotation a) {
  return a == null ? null : String.format("\"%s\"(type=%d)", a.getCoveredText(), a.getTypeID());
}

代码示例来源：origin: apache/ctakes

static String format(IdentifiedAnnotation a) {
  return a == null ? null : String.format("\"%s\"(type=%d)", a.getCoveredText(), a.getTypeID());
}

代码示例来源：origin: org.apache.ctakes/ctakes-side-effect

/**
 * Return true if pse is sideEffectWord and there is no other pse(s) in the pse.sentence 
 * but if the pse sentence contains certain word, return false
 * - this is a naive rule 
 * - sideEffectWord must not be negated
 * 
 * @param jcas
 * @param pse potential side effect
 * @param input modified SE sentence used for regular expression match
 * @return true if finds a given pattern, else false 
 */	
private boolean hasSideEffectAsPse(JCas jcas, PotentialSideEffect pse, String input) {
  //if the pse sentence contains certain word, return false
  if(input.matches(".*(dicussed|concerned).*")) return false;
      
  //if pse!=sideEffectWord, return false
  String str = pse.ne.getCoveredText().replace('-', ' ').toLowerCase().trim();
  if(!sideEffectWord.contains(str)) return false;
  
  //if there is PSE, return false
  if(input.matches(".*(<PSE>).*")) return false;
      
  return true;
}

代码示例来源：origin: org.apache.ctakes/ctakes-core

/**
* I2b2 wants annotation begin and end offsets plus the covered text
* @param jcas in case the blob needs to obtain annotation information from the jcas
* @param annotation -
* @return a blob with encoded text span and covered text of the annotation
*/
protected String createBlob( final JCas jcas, final IdentifiedAnnotation annotation ) {
 final StringBuilder sb = new StringBuilder();
 sb.append( '<' ).append( SPAN_START_LABEL ).append( '>' );
 sb.append( annotation.getBegin() );
 sb.append( "</" ).append( SPAN_START_LABEL ).append( '>' );
 sb.append( '<' ).append( SPAN_END_LABEL ).append( '>' );
 sb.append( annotation.getEnd() );
 sb.append( "</" ).append( SPAN_END_LABEL ).append( '>' );
 sb.append( annotation.getCoveredText() );
 return sb.toString();
}

代码示例来源：origin: apache/ctakes

/**
* I2b2 wants annotation begin and end offsets plus the covered text
* @param jcas in case the blob needs to obtain annotation information from the jcas
* @param annotation -
* @return a blob with encoded text span and covered text of the annotation
*/
protected String createBlob( final JCas jcas, final IdentifiedAnnotation annotation ) {
 final StringBuilder sb = new StringBuilder();
 sb.append( '<' ).append( SPAN_START_LABEL ).append( '>' );
 sb.append( annotation.getBegin() );
 sb.append( "</" ).append( SPAN_START_LABEL ).append( '>' );
 sb.append( '<' ).append( SPAN_END_LABEL ).append( '>' );
 sb.append( annotation.getEnd() );
 sb.append( "</" ).append( SPAN_END_LABEL ).append( '>' );
 sb.append( annotation.getCoveredText() );
 return sb.toString();
}

代码示例来源：origin: apache/ctakes

static private String createBsvLine( final IdentifiedAnnotation annotation,
                  final UmlsConcept concept,
                  final String locationCuis ) {
 final StringBuilder sb = new StringBuilder();
 sb.append( concept.getCode() ).append( '|' )
  .append( concept.getPreferredText() ).append( '|' )
  .append( SemanticTui.getTuiFromCode( concept.getTui() ).getGroupName() ).append( '|' )
  .append( annotation.getPolarity() == CONST.NE_POLARITY_NEGATION_PRESENT ? "true" : "false" ).append( '|' )
  .append( annotation.getSubject().equals( CONST.ATTR_SUBJECT_FAMILY_MEMBER ) ? "true" : "false" ).append( '|' )
  .append( locationCuis ).append( '|' )
  .append( annotation.getCoveredText() );
 return sb.toString();
}

代码示例来源：origin: org.apache.ctakes/ctakes-relation-extractor

@Override
public List<IdentifiedAnnotationPair> getCandidateRelationArgumentPairs(
    JCas identifiedAnnotationView, Annotation sentence) {
 List<IdentifiedAnnotationPair> pairs = super.getCandidateRelationArgumentPairs(identifiedAnnotationView, sentence);
  
  // look for sentences with one entity and one modifier
List<IdentifiedAnnotationPair> result = new ArrayList<IdentifiedAnnotationPair>();
  if (pairs.size() == 1) {
   IdentifiedAnnotationPair pair = pairs.get(0);
   if(Utils.validateDegreeOfArgumentTypes(pair)) {
    System.out.println(sentence.getCoveredText());
    System.out.println("arg1: " + pair.getArg1().getCoveredText());
    System.out.println("arg2: " + pair.getArg2().getCoveredText());
    System.out.println();
    result.add(pair);
   }
  }
      
  return result;
}

代码示例来源：origin: org.apache.ctakes/ctakes-coreference

private List<CollectionTextRelationIdentifiedAnnotationPair> getExactStringMatchPairs(
  JCas jcas, IdentifiedAnnotation mention, int sentDist) {
 List<CollectionTextRelationIdentifiedAnnotationPair> pairs = new ArrayList<>();
 
 if(markableStrings.contains(mention.getCoveredText().toLowerCase())){
  for(CollectionTextRelation cluster : JCasUtil.select(jcas, CollectionTextRelation.class)){
   Annotation mostRecent = ClusterUtils.getMostRecent((NonEmptyFSList)cluster.getMembers(), mention);
   if(mostRecent == null) continue;
   for(Markable m : JCasUtil.select(cluster.getMembers(), Markable.class)){
    if(m == mostRecent) break;
    // see if any of the members of the cluster have the exact same string as this 
    if(m.getCoveredText().toLowerCase().equals(mention.getCoveredText().toLowerCase())){
     pairs.add(new CollectionTextRelationIdentifiedAnnotationPair(cluster, mention));
     break;
    }
   }
  }
 }
 return pairs;
}

代码示例来源：origin: apache/ctakes

@Override
public List<IdentifiedAnnotationPair> getCandidateRelationArgumentPairs(
    JCas identifiedAnnotationView, Annotation sentence) {
 List<IdentifiedAnnotationPair> pairs = super.getCandidateRelationArgumentPairs(identifiedAnnotationView, sentence);
  
  // look for sentences with one entity and one modifier
List<IdentifiedAnnotationPair> result = new ArrayList<IdentifiedAnnotationPair>();
  if (pairs.size() == 1) {
   IdentifiedAnnotationPair pair = pairs.get(0);
   if(Utils.validateDegreeOfArgumentTypes(pair)) {
    System.out.println(sentence.getCoveredText());
    System.out.println("arg1: " + pair.getArg1().getCoveredText());
    System.out.println("arg2: " + pair.getArg2().getCoveredText());
    System.out.println();
    result.add(pair);
   }
  }
      
  return result;
}

代码示例来源：origin: apache/ctakes

private List<CollectionTextRelationIdentifiedAnnotationPair> getExactStringMatchPairs(
  JCas jcas, IdentifiedAnnotation mention, int sentDist) {
 List<CollectionTextRelationIdentifiedAnnotationPair> pairs = new ArrayList<>();
 
 if(markableStrings.contains(mention.getCoveredText().toLowerCase())){
  for(CollectionTextRelation cluster : JCasUtil.select(jcas, CollectionTextRelation.class)){
   Annotation mostRecent = ClusterUtils.getMostRecent((NonEmptyFSList)cluster.getMembers(), mention);
   if(mostRecent == null) continue;
   for(Markable m : JCasUtil.select(cluster.getMembers(), Markable.class)){
    if(m == mostRecent) break;
    // see if any of the members of the cluster have the exact same string as this 
    if(m.getCoveredText().toLowerCase().equals(mention.getCoveredText().toLowerCase())){
     pairs.add(new CollectionTextRelationIdentifiedAnnotationPair(cluster, mention));
     break;
    }
   }
  }
 }
 return pairs;
}

代码示例来源：origin: org.apache.ctakes/ctakes-assertion

private void printContext(String text, IdentifiedAnnotation mention, int radius) {
    int mentionBegin = mention.getBegin();
    int mentionEnd   = mention.getEnd();
    StringBuilder sb = new StringBuilder();
    
    int snipBegin;
    int snipEnd;
    snipBegin = (mentionBegin-radius<0)?             0               : mentionBegin-radius;
    snipEnd   = (mentionEnd+radius>text.length()-1)? text.length()-1 : mentionEnd+radius;

    String[] tmp = mention.getClass().getName().split("\\.");
    String semGroup = tmp[tmp.length-1];

    sb.append(text.substring(snipBegin, mentionBegin));
    sb.append("[[["+mention.getCoveredText()+"]]]");
    sb.append(text.substring(mentionEnd, snipEnd));
//        sb.toString().replaceAll("\\n", "\\n| ");
    System.out.println("| "+ sb.toString().replaceAll("\\n", "\n| "));
    
    System.out.println(": "+ semGroup + 
        " : beg=" + mention.getBegin() + " : end=" + mention.getEnd() +
        " : c=" + mention.getConditional()  + " : g=" + mention.getGeneric() +
        " : h=" + mention.getHistoryOf() + " : p="  + mention.getPolarity() + 
        " : s=" + mention.getSubject() + " : u="  + mention.getUncertainty());
  }

代码示例来源：origin: apache/ctakes

private static String formatRelation(BinaryTextRelation relation) {
  IdentifiedAnnotation arg1 = (IdentifiedAnnotation) relation.getArg1().getArgument();
  IdentifiedAnnotation arg2 = (IdentifiedAnnotation) relation.getArg2().getArgument();
  String text = arg1.getCAS().getDocumentText();
  int begin = Math.min(arg1.getBegin(), arg2.getBegin());
  int end = Math.max(arg1.getBegin(), arg2.getBegin());
  begin = Math.max(0, begin - 50);
  end = Math.min(text.length(), end + 50);
  return String.format(
      "%s(%s(type=%d), %s(type=%d)) in ...%s...",
      relation.getCategory(),
      arg1.getCoveredText(),
      arg1.getTypeID(),
      arg2.getCoveredText(),
      arg2.getTypeID(),
      text.substring(begin, end).replaceAll("[\r\n]", " "));
}

代码示例来源：origin: org.apache.ctakes/ctakes-relation-extractor

private static String formatRelation(BinaryTextRelation relation) {
  IdentifiedAnnotation arg1 = (IdentifiedAnnotation) relation.getArg1().getArgument();
  IdentifiedAnnotation arg2 = (IdentifiedAnnotation) relation.getArg2().getArgument();
  String text = arg1.getCAS().getDocumentText();
  int begin = Math.min(arg1.getBegin(), arg2.getBegin());
  int end = Math.max(arg1.getBegin(), arg2.getBegin());
  begin = Math.max(0, begin - 50);
  end = Math.min(text.length(), end + 50);
  return String.format(
      "%s(%s(type=%d), %s(type=%d)) in ...%s...",
      relation.getCategory(),
      arg1.getCoveredText(),
      arg1.getTypeID(),
      arg2.getCoveredText(),
      arg2.getTypeID(),
      text.substring(begin, end).replaceAll("[\r\n]", " "));
}

代码示例来源：origin: org.apache.ctakes/ctakes-core

private Entity( final IdentifiedAnnotation annotation ) {
  _begin = annotation.getBegin();
  _end = annotation.getEnd();
  _coveredText = annotation.getCoveredText();
  _polarity = annotation.getPolarity();
  _uncertainty = annotation.getUncertainty();
  _conditional = annotation.getConditional();
  _generic = annotation.getGeneric();
  _subject = annotation.getSubject();
  _historyOf = annotation.getHistoryOf();
}

代码示例来源：origin: apache/ctakes

private Entity( final IdentifiedAnnotation annotation ) {
  _begin = annotation.getBegin();
  _end = annotation.getEnd();
  _coveredText = annotation.getCoveredText();
  _polarity = annotation.getPolarity();
  _uncertainty = annotation.getUncertainty();
  _conditional = annotation.getConditional();
  _generic = annotation.getGeneric();
  _subject = annotation.getSubject();
  _historyOf = annotation.getHistoryOf();
}

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