org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation.getSubject()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
字(12.8k)|赞(0)|评价(0)|浏览(63)

本文整理了Java中org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation.getSubject()方法的一些代码示例,展示了IdentifiedAnnotation.getSubject()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。IdentifiedAnnotation.getSubject()方法的具体详情如下:
包路径:org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
类名称:IdentifiedAnnotation
方法名:getSubject

IdentifiedAnnotation.getSubject介绍

[英]getter for subject - gets
[中]主题获取的getter

代码示例

代码示例来源:origin: org.apache.ctakes/ctakes-coreference

public static boolean isPatient(IdentifiedAnnotation mention){
 return mention.getSubject() == CONST.ATTR_SUBJECT_PATIENT;
}

代码示例来源:origin: apache/ctakes

public static boolean isPatient(IdentifiedAnnotation mention){
 return mention.getSubject() == CONST.ATTR_SUBJECT_PATIENT;
}

代码示例来源:origin: apache/ctakes

static private String createBsvLine( final IdentifiedAnnotation annotation,
                  final UmlsConcept concept,
                  final String locationCuis ) {
 final StringBuilder sb = new StringBuilder();
 sb.append( concept.getCode() ).append( '|' )
  .append( concept.getPreferredText() ).append( '|' )
  .append( SemanticTui.getTuiFromCode( concept.getTui() ).getGroupName() ).append( '|' )
  .append( annotation.getPolarity() == CONST.NE_POLARITY_NEGATION_PRESENT ? "true" : "false" ).append( '|' )
  .append( annotation.getSubject().equals( CONST.ATTR_SUBJECT_FAMILY_MEMBER ) ? "true" : "false" ).append( '|' )
  .append( locationCuis ).append( '|' )
  .append( annotation.getCoveredText() );
 return sb.toString();
}

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

@Override
  public void process(JCas jCas) throws AnalysisEngineProcessException {
    for (IdentifiedAnnotation mention : JCasUtil.select(jCas, IdentifiedAnnotation.class)) {

      // For each mention, set the subject attribute
//            if (mention.getGeneric() == true ) {
//                mention.setSubject (null);
//            } else {
        String oldsubj = mention.getSubject();
        mention.setSubject( SubjectAttributeClassifier.getSubject(jCas, mention) );
//                System.err.println("Word:"+mention.getCoveredText()+", overwrote subject "+oldsubj+" with "+mention.getSubject());
//            }
    }
    
    
  }
}

代码示例来源:origin: apache/ctakes

@Override
  public void process(JCas jCas) throws AnalysisEngineProcessException {
    for (IdentifiedAnnotation mention : JCasUtil.select(jCas, IdentifiedAnnotation.class)) {

      // For each mention, set the subject attribute
//            if (mention.getGeneric() == true ) {
//                mention.setSubject (null);
//            } else {
        String oldsubj = mention.getSubject();
        mention.setSubject( SubjectAttributeClassifier.getSubject(jCas, mention) );
//                System.err.println("Word:"+mention.getCoveredText()+", overwrote subject "+oldsubj+" with "+mention.getSubject());
//            }
    }
    
    
  }
}

代码示例来源:origin: org.apache.ctakes/ctakes-core

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: apache/ctakes

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: apache/ctakes

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

@Override
public void setClassLabel(IdentifiedAnnotation entityOrEventMention,
  Instance<String> instance) throws AnalysisEngineProcessException {
 if (this.isTraining())
   {
    String subj = entityOrEventMention.getSubject();
    
    // downsampling. initialize probabilityOfKeepingADefaultExample to 1.0 for no downsampling
    if ("patient".equals(subj) 
      && coin.nextDouble() >= this.probabilityOfKeepingADefaultExample) {
     return;
    }
    instance.setOutcome(subj);
    logger.log(Level.DEBUG,  String.format("[%s] expected: ''; actual: ''; features: %s",
       this.getClass().getSimpleName(),
       instance.toString()
       ));
   } else
   {
    String label = this.classifier.classify(instance.getFeatures());
    entityOrEventMention.setSubject(label);
    logger.log(Level.DEBUG, "SUBJECT is being set on an IdentifiedAnnotation: "+label+" "+entityOrEventMention.getSubject());
   }
}
public static FeatureSelection<String> createFeatureSelection(double threshold) {

代码示例来源:origin: apache/ctakes

private String getAttrValueString(IdentifiedAnnotation mention, Selector s) {
  switch (s) {
  case CONDITIONAL:
    return String.valueOf(mention.getConditional());
  case GENERIC:
    return String.valueOf(mention.getGeneric());
  case HISTORYOF:
    return String.valueOf(mention.getHistoryOf());
  case POLARITY:
    return String.valueOf(mention.getPolarity());
  case SUBJECT:
    return String.valueOf(mention.getSubject());
  case UNCERTAINTY:
    return String.valueOf(mention.getUncertainty());
  default:
    return "?";
  }
}

代码示例来源:origin: apache/ctakes

@Override
public void setClassLabel( IdentifiedAnnotation entityOrEventMention,
             Instance<String> instance ) throws AnalysisEngineProcessException {
 if ( this.isTraining() ) {
   String subj = entityOrEventMention.getSubject();
   // downsampling. initialize probabilityOfKeepingADefaultExample to 1.0 for no downsampling
   if ( "patient".equals( subj )
     && coin.nextDouble() >= this.probabilityOfKeepingADefaultExample ) {
    return;
   }
   instance.setOutcome( subj );
   logger.log( Level.DEBUG, String.format( "[%s] expected: ''; actual: ''; features: %s",
      this.getClass().getSimpleName(),
      instance.toString()
   ) );
 } else {
   String label = this.classifier.classify( instance.getFeatures() );
   entityOrEventMention.setSubject( label );
   logger.log( Level.DEBUG,
      "SUBJECT is being set on an IdentifiedAnnotation: " + label + " " + entityOrEventMention.getSubject() );
 }
}

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

private String getAttrValueString(IdentifiedAnnotation mention, Selector s) {
  switch (s) {
  case CONDITIONAL:
    return String.valueOf(mention.getConditional());
  case GENERIC:
    return String.valueOf(mention.getGeneric());
  case HISTORYOF:
    return String.valueOf(mention.getHistoryOf());
  case POLARITY:
    return String.valueOf(mention.getPolarity());
  case SUBJECT:
    return String.valueOf(mention.getSubject());
  case UNCERTAINTY:
    return String.valueOf(mention.getUncertainty());
  default:
    return "?";
  }
}

代码示例来源:origin: apache/ctakes

@Override
public void setClassLabel(IdentifiedAnnotation entityOrEventMention,
  Instance<String> instance) throws AnalysisEngineProcessException {
 if (this.isTraining())
   {
    String subj = entityOrEventMention.getSubject();
    
    // downsampling. initialize probabilityOfKeepingADefaultExample to 1.0 for no downsampling
    if ("patient".equals(subj) 
      && coin.nextDouble() >= this.probabilityOfKeepingADefaultExample) {
     return;
    }
    instance.setOutcome(subj);
    logger.log(Level.DEBUG,  String.format("[%s] expected: ''; actual: ''; features: %s",
       this.getClass().getSimpleName(),
       instance.toString()
       ));
   } else
   {
    String label = this.classifier.classify(instance.getFeatures());
    entityOrEventMention.setSubject(label);
    logger.log(Level.DEBUG, "SUBJECT is being set on an IdentifiedAnnotation: "+label+" "+entityOrEventMention.getSubject());
   }
}
public static FeatureSelection<String> createFeatureSelection(double threshold) {

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

private void printContext(String text, IdentifiedAnnotation mention, int radius) {
    int mentionBegin = mention.getBegin();
    int mentionEnd   = mention.getEnd();
    StringBuilder sb = new StringBuilder();
    
    int snipBegin;
    int snipEnd;
    snipBegin = (mentionBegin-radius<0)?             0               : mentionBegin-radius;
    snipEnd   = (mentionEnd+radius>text.length()-1)? text.length()-1 : mentionEnd+radius;

    String[] tmp = mention.getClass().getName().split("\\.");
    String semGroup = tmp[tmp.length-1];

    sb.append(text.substring(snipBegin, mentionBegin));
    sb.append("[[["+mention.getCoveredText()+"]]]");
    sb.append(text.substring(mentionEnd, snipEnd));
//        sb.toString().replaceAll("\\n", "\\n| ");
    System.out.println("| "+ sb.toString().replaceAll("\\n", "\n| "));
    
    System.out.println(": "+ semGroup + 
        " : beg=" + mention.getBegin() + " : end=" + mention.getEnd() +
        " : c=" + mention.getConditional()  + " : g=" + mention.getGeneric() +
        " : h=" + mention.getHistoryOf() + " : p="  + mention.getPolarity() + 
        " : s=" + mention.getSubject() + " : u="  + mention.getUncertainty());
  }

代码示例来源:origin: apache/ctakes

private void printContext(String text, IdentifiedAnnotation mention, int radius) {
    int mentionBegin = mention.getBegin();
    int mentionEnd   = mention.getEnd();
    StringBuilder sb = new StringBuilder();
    
    int snipBegin;
    int snipEnd;
    snipBegin = (mentionBegin-radius<0)?             0               : mentionBegin-radius;
    snipEnd   = (mentionEnd+radius>text.length()-1)? text.length()-1 : mentionEnd+radius;

    String[] tmp = mention.getClass().getName().split("\\.");
    String semGroup = tmp[tmp.length-1];

    sb.append(text.substring(snipBegin, mentionBegin));
    sb.append("[[["+mention.getCoveredText()+"]]]");
    sb.append(text.substring(mentionEnd, snipEnd));
//        sb.toString().replaceAll("\\n", "\\n| ");
    System.out.println("| "+ sb.toString().replaceAll("\\n", "\n| "));
    
    System.out.println(": "+ semGroup + 
        " : beg=" + mention.getBegin() + " : end=" + mention.getEnd() +
        " : c=" + mention.getConditional()  + " : g=" + mention.getGeneric() +
        " : h=" + mention.getHistoryOf() + " : p="  + mention.getPolarity() + 
        " : s=" + mention.getSubject() + " : u="  + mention.getUncertainty());
  }

代码示例来源:origin: org.apache.ctakes/ctakes-core

private Entity( final IdentifiedAnnotation annotation ) {
  _begin = annotation.getBegin();
  _end = annotation.getEnd();
  _coveredText = annotation.getCoveredText();
  _polarity = annotation.getPolarity();
  _uncertainty = annotation.getUncertainty();
  _conditional = annotation.getConditional();
  _generic = annotation.getGeneric();
  _subject = annotation.getSubject();
  _historyOf = annotation.getHistoryOf();
}

代码示例来源:origin: apache/ctakes

private Entity( final IdentifiedAnnotation annotation ) {
  _begin = annotation.getBegin();
  _end = annotation.getEnd();
  _coveredText = annotation.getCoveredText();
  _polarity = annotation.getPolarity();
  _uncertainty = annotation.getUncertainty();
  _conditional = annotation.getConditional();
  _generic = annotation.getGeneric();
  _subject = annotation.getSubject();
  _historyOf = annotation.getHistoryOf();
}

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

/**
 * 
 * @param goldAnnotation
 * @param jcas
 */
private static void copyAnnotation(Annotation goldAnnotation, JCas jcas) {
  
  Annotation newAnno;
  if (goldAnnotation instanceof IdentifiedAnnotation) {
    IdentifiedAnnotation ia = new IdentifiedAnnotation(jcas);
    ia.setConditional(((IdentifiedAnnotation) goldAnnotation).getConditional());
    ia.setConfidence(((IdentifiedAnnotation) goldAnnotation).getConfidence());
    ia.setDiscoveryTechnique(((IdentifiedAnnotation)goldAnnotation).getDiscoveryTechnique());
    ia.setGeneric(((IdentifiedAnnotation) goldAnnotation).getGeneric());
    ia.setHistoryOf(((IdentifiedAnnotation) goldAnnotation).getHistoryOf());
    ia.setPolarity(((IdentifiedAnnotation) goldAnnotation).getPolarity());
    ia.setSegmentID(((IdentifiedAnnotation) goldAnnotation).getSegmentID());
    ia.setSentenceID(((IdentifiedAnnotation) goldAnnotation).getSentenceID());
    ia.setSubject(((IdentifiedAnnotation) goldAnnotation).getSubject());
    ia.setTypeID(((IdentifiedAnnotation) goldAnnotation).getTypeID());
    ia.setUncertainty(((IdentifiedAnnotation) goldAnnotation).getUncertainty());
    newAnno = ia;
  } else {
    throw new RuntimeException("Unexpected class of object " + goldAnnotation.getClass());
  }
  newAnno.setBegin(goldAnnotation.getBegin());
  newAnno.setEnd(goldAnnotation.getEnd());
  newAnno.addToIndexes();
  
}

代码示例来源:origin: apache/ctakes

/**
 * 
 * @param goldAnnotation
 * @param jcas
 */
private static void copyAnnotation(Annotation goldAnnotation, JCas jcas) {
  
  Annotation newAnno;
  if (goldAnnotation instanceof IdentifiedAnnotation) {
    IdentifiedAnnotation ia = new IdentifiedAnnotation(jcas);
    ia.setConditional(((IdentifiedAnnotation) goldAnnotation).getConditional());
    ia.setConfidence(((IdentifiedAnnotation) goldAnnotation).getConfidence());
    ia.setDiscoveryTechnique(((IdentifiedAnnotation)goldAnnotation).getDiscoveryTechnique());
    ia.setGeneric(((IdentifiedAnnotation) goldAnnotation).getGeneric());
    ia.setHistoryOf(((IdentifiedAnnotation) goldAnnotation).getHistoryOf());
    ia.setPolarity(((IdentifiedAnnotation) goldAnnotation).getPolarity());
    ia.setSegmentID(((IdentifiedAnnotation) goldAnnotation).getSegmentID());
    ia.setSentenceID(((IdentifiedAnnotation) goldAnnotation).getSentenceID());
    ia.setSubject(((IdentifiedAnnotation) goldAnnotation).getSubject());
    ia.setTypeID(((IdentifiedAnnotation) goldAnnotation).getTypeID());
    ia.setUncertainty(((IdentifiedAnnotation) goldAnnotation).getUncertainty());
    newAnno = ia;
  } else {
    throw new RuntimeException("Unexpected class of object " + goldAnnotation.getClass());
  }
  newAnno.setBegin(goldAnnotation.getBegin());
  newAnno.setEnd(goldAnnotation.getEnd());
  newAnno.addToIndexes();
  
}

相关文章

微信公众号

最新文章

更多