org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation.setSubject()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
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本文整理了Java中org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation.setSubject()方法的一些代码示例,展示了IdentifiedAnnotation.setSubject()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。IdentifiedAnnotation.setSubject()方法的具体详情如下:
包路径:org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
类名称:IdentifiedAnnotation
方法名:setSubject

IdentifiedAnnotation.setSubject介绍

[英]setter for subject - sets
[中]主题集设置器

代码示例

代码示例来源:origin: apache/ctakes

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: apache/ctakes

/**
* {@inheritDoc}
*/
@Override
public void process( final JCas jCas ) throws AnalysisEngineProcessException {
 LOGGER.info( "Adjusting Subject based upon Section ..." );
 final Collection<Segment> sections = JCasUtil.select( jCas, Segment.class );
 for ( Segment section : sections ) {
   if ( !FAMILY_HISTORY.contains( section.getPreferredText() ) ) {
    continue;
   }
   final Collection<IdentifiedAnnotation> annotations
      = JCasUtil.selectCovered( jCas, IdentifiedAnnotation.class, section );
   if ( annotations == null ) {
    continue;
   }
   for ( IdentifiedAnnotation annotation : annotations ) {
    annotation.setSubject( CONST.ATTR_SUBJECT_FAMILY_MEMBER );
   }
 }
 LOGGER.info( "Finished Processing" );
}

代码示例来源:origin: org.apache.ctakes/ctakes-core

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

@Override
  public void process(JCas jCas) throws AnalysisEngineProcessException {
    for (IdentifiedAnnotation mention : JCasUtil.select(jCas, IdentifiedAnnotation.class)) {

      // For each mention, set the subject attribute
//            if (mention.getGeneric() == true ) {
//                mention.setSubject (null);
//            } else {
        String oldsubj = mention.getSubject();
        mention.setSubject( SubjectAttributeClassifier.getSubject(jCas, mention) );
//                System.err.println("Word:"+mention.getCoveredText()+", overwrote subject "+oldsubj+" with "+mention.getSubject());
//            }
    }
    
    
  }
}

代码示例来源:origin: apache/ctakes

@Override
  public void process(JCas jCas) throws AnalysisEngineProcessException {
    for (IdentifiedAnnotation mention : JCasUtil.select(jCas, IdentifiedAnnotation.class)) {

      // For each mention, set the subject attribute
//            if (mention.getGeneric() == true ) {
//                mention.setSubject (null);
//            } else {
        String oldsubj = mention.getSubject();
        mention.setSubject( SubjectAttributeClassifier.getSubject(jCas, mention) );
//                System.err.println("Word:"+mention.getCoveredText()+", overwrote subject "+oldsubj+" with "+mention.getSubject());
//            }
    }
    
    
  }
}

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: apache/ctakes

@Override
 public void setValueFrom(Map<String, ? extends TOP> annotationMap) {
  super.setValueFrom(annotationMap);
  if (mention.getSubject() == null) {
   mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
  }
 }
});

代码示例来源:origin: apache/ctakes

"df=donor_family_member, do=donor_other, o=other... or s=skip");
if (response.startsWith("p")) {
  mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
} else if (response.startsWith("f")) {
  mention.setSubject(CONST.ATTR_SUBJECT_FAMILY_MEMBER);
} else if (response.startsWith("df")) {
  mention.setSubject(CONST.ATTR_SUBJECT_DONOR_FAMILY_MEMBER);
} else if (response.equals("do")) {
  mention.setSubject(CONST.ATTR_SUBJECT_DONOR_OTHER);
} else if (response.startsWith("o")) {
  mention.setSubject(CONST.ATTR_SUBJECT_OTHER);
} else {
  System.out.println("hmm... i'm skipping it.");

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

"df=donor_family_member, do=donor_other, o=other... or s=skip");
if (response.startsWith("p")) {
  mention.setSubject(CONST.ATTR_SUBJECT_PATIENT);
} else if (response.startsWith("f")) {
  mention.setSubject(CONST.ATTR_SUBJECT_FAMILY_MEMBER);
} else if (response.startsWith("df")) {
  mention.setSubject(CONST.ATTR_SUBJECT_DONOR_FAMILY_MEMBER);
} else if (response.equals("do")) {
  mention.setSubject(CONST.ATTR_SUBJECT_DONOR_OTHER);
} else if (response.startsWith("o")) {
  mention.setSubject(CONST.ATTR_SUBJECT_OTHER);
} else {
  System.out.println("hmm... i'm skipping it.");

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

private void checkForAttrValue(IdentifiedAnnotation eMention, String role,
    String value) {
  if (role.contains("_normalization")) {
     if (role.startsWith("conditional")) {
       eMention.setConditional(Boolean.valueOf(value));
     } else if (role.startsWith("generic")) {
       eMention.setGeneric(Boolean.valueOf(value));
     } else if (role.startsWith("negation_indicator")) {
       // assumes that the string from Knowtator is exactly "negation_present"
       if (value.equals("negation_present")) { 
         eMention.setPolarity(CONST.NE_POLARITY_NEGATION_PRESENT);
       } else {
         eMention.setPolarity(CONST.NE_POLARITY_NEGATION_ABSENT);
       }
     } else if (role.startsWith("subject")) {
       // assumes that the strings from Knowtator are exactly what's in the type system
       eMention.setSubject(value);
     } else if (role.startsWith("uncertainty_indicator")) {
       // assumes that the string from Knowtator is exactly "indicator_present"
       if (value.equals("indicator_present")) { 
         eMention.setUncertainty(CONST.NE_UNCERTAINTY_PRESENT);
       } else {
         eMention.setUncertainty(CONST.NE_UNCERTAINTY_ABSENT);
       }
     } else if (role.startsWith("generic")) {
       eMention.setGeneric(Boolean.valueOf(value));
     }
   }
}

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

@Override
public void setClassLabel(IdentifiedAnnotation entityOrEventMention,
  Instance<String> instance) throws AnalysisEngineProcessException {
 if (this.isTraining())
   {
    String subj = entityOrEventMention.getSubject();
    
    // downsampling. initialize probabilityOfKeepingADefaultExample to 1.0 for no downsampling
    if ("patient".equals(subj) 
      && coin.nextDouble() >= this.probabilityOfKeepingADefaultExample) {
     return;
    }
    instance.setOutcome(subj);
    logger.log(Level.DEBUG,  String.format("[%s] expected: ''; actual: ''; features: %s",
       this.getClass().getSimpleName(),
       instance.toString()
       ));
   } else
   {
    String label = this.classifier.classify(instance.getFeatures());
    entityOrEventMention.setSubject(label);
    logger.log(Level.DEBUG, "SUBJECT is being set on an IdentifiedAnnotation: "+label+" "+entityOrEventMention.getSubject());
   }
}
public static FeatureSelection<String> createFeatureSelection(double threshold) {

代码示例来源:origin: apache/ctakes

private void checkForAttrValue(IdentifiedAnnotation eMention, String role,
    String value) {
  if (role.contains("_normalization")) {
     if (role.startsWith("conditional")) {
       eMention.setConditional(Boolean.valueOf(value));
     } else if (role.startsWith("generic")) {
       eMention.setGeneric(Boolean.valueOf(value));
     } else if (role.startsWith("negation_indicator")) {
       // assumes that the string from Knowtator is exactly "negation_present"
       if (value.equals("negation_present")) { 
         eMention.setPolarity(CONST.NE_POLARITY_NEGATION_PRESENT);
       } else {
         eMention.setPolarity(CONST.NE_POLARITY_NEGATION_ABSENT);
       }
     } else if (role.startsWith("subject")) {
       // assumes that the strings from Knowtator are exactly what's in the type system
       eMention.setSubject(value);
     } else if (role.startsWith("uncertainty_indicator")) {
       // assumes that the string from Knowtator is exactly "indicator_present"
       if (value.equals("indicator_present")) { 
         eMention.setUncertainty(CONST.NE_UNCERTAINTY_PRESENT);
       } else {
         eMention.setUncertainty(CONST.NE_UNCERTAINTY_ABSENT);
       }
     } else if (role.startsWith("generic")) {
       eMention.setGeneric(Boolean.valueOf(value));
     }
   }
}

代码示例来源:origin: apache/ctakes

@Override
public void setClassLabel( IdentifiedAnnotation entityOrEventMention,
             Instance<String> instance ) throws AnalysisEngineProcessException {
 if ( this.isTraining() ) {
   String subj = entityOrEventMention.getSubject();
   // downsampling. initialize probabilityOfKeepingADefaultExample to 1.0 for no downsampling
   if ( "patient".equals( subj )
     && coin.nextDouble() >= this.probabilityOfKeepingADefaultExample ) {
    return;
   }
   instance.setOutcome( subj );
   logger.log( Level.DEBUG, String.format( "[%s] expected: ''; actual: ''; features: %s",
      this.getClass().getSimpleName(),
      instance.toString()
   ) );
 } else {
   String label = this.classifier.classify( instance.getFeatures() );
   entityOrEventMention.setSubject( label );
   logger.log( Level.DEBUG,
      "SUBJECT is being set on an IdentifiedAnnotation: " + label + " " + entityOrEventMention.getSubject() );
 }
}

代码示例来源:origin: apache/ctakes

@Override
public void setClassLabel(IdentifiedAnnotation entityOrEventMention,
  Instance<String> instance) throws AnalysisEngineProcessException {
 if (this.isTraining())
   {
    String subj = entityOrEventMention.getSubject();
    
    // downsampling. initialize probabilityOfKeepingADefaultExample to 1.0 for no downsampling
    if ("patient".equals(subj) 
      && coin.nextDouble() >= this.probabilityOfKeepingADefaultExample) {
     return;
    }
    instance.setOutcome(subj);
    logger.log(Level.DEBUG,  String.format("[%s] expected: ''; actual: ''; features: %s",
       this.getClass().getSimpleName(),
       instance.toString()
       ));
   } else
   {
    String label = this.classifier.classify(instance.getFeatures());
    entityOrEventMention.setSubject(label);
    logger.log(Level.DEBUG, "SUBJECT is being set on an IdentifiedAnnotation: "+label+" "+entityOrEventMention.getSubject());
   }
}
public static FeatureSelection<String> createFeatureSelection(double threshold) {

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

static private void fillProperties( final IdentifiedAnnotation annotation,
                  final int polarity, final int uncertainty,
                  final boolean generic, final boolean conditional,
                  final String subject, final float confidence ) {
 annotation.setPolarity( polarity );
 annotation.setUncertainty( uncertainty );
 annotation.setGeneric( generic );
 annotation.setConditional( conditional );
 annotation.setSubject( subject );
 annotation.setConfidence( confidence );
}

代码示例来源:origin: apache/ctakes

static private void fillProperties( final IdentifiedAnnotation annotation,
                  final int polarity, final int uncertainty,
                  final boolean generic, final boolean conditional,
                  final String subject, final float confidence ) {
 annotation.setPolarity( polarity );
 annotation.setUncertainty( uncertainty );
 annotation.setGeneric( generic );
 annotation.setConditional( conditional );
 annotation.setSubject( subject );
 annotation.setConfidence( confidence );
}

代码示例来源:origin: apache/ctakes

break;
case SUBJECT:
  m.setSubject(mention.getSubject());
  break;
case UNCERTAINTY:

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

break;
case SUBJECT:
  m.setSubject(mention.getSubject());
  break;
case UNCERTAINTY:

代码示例来源:origin: org.apache.ctakes/ctakes-assertion

/**
 * 
 * @param goldAnnotation
 * @param jcas
 */
private static void copyAnnotation(Annotation goldAnnotation, JCas jcas) {
  
  Annotation newAnno;
  if (goldAnnotation instanceof IdentifiedAnnotation) {
    IdentifiedAnnotation ia = new IdentifiedAnnotation(jcas);
    ia.setConditional(((IdentifiedAnnotation) goldAnnotation).getConditional());
    ia.setConfidence(((IdentifiedAnnotation) goldAnnotation).getConfidence());
    ia.setDiscoveryTechnique(((IdentifiedAnnotation)goldAnnotation).getDiscoveryTechnique());
    ia.setGeneric(((IdentifiedAnnotation) goldAnnotation).getGeneric());
    ia.setHistoryOf(((IdentifiedAnnotation) goldAnnotation).getHistoryOf());
    ia.setPolarity(((IdentifiedAnnotation) goldAnnotation).getPolarity());
    ia.setSegmentID(((IdentifiedAnnotation) goldAnnotation).getSegmentID());
    ia.setSentenceID(((IdentifiedAnnotation) goldAnnotation).getSentenceID());
    ia.setSubject(((IdentifiedAnnotation) goldAnnotation).getSubject());
    ia.setTypeID(((IdentifiedAnnotation) goldAnnotation).getTypeID());
    ia.setUncertainty(((IdentifiedAnnotation) goldAnnotation).getUncertainty());
    newAnno = ia;
  } else {
    throw new RuntimeException("Unexpected class of object " + goldAnnotation.getClass());
  }
  newAnno.setBegin(goldAnnotation.getBegin());
  newAnno.setEnd(goldAnnotation.getEnd());
  newAnno.addToIndexes();
  
}

代码示例来源:origin: apache/ctakes

/**
 * 
 * @param goldAnnotation
 * @param jcas
 */
private static void copyAnnotation(Annotation goldAnnotation, JCas jcas) {
  
  Annotation newAnno;
  if (goldAnnotation instanceof IdentifiedAnnotation) {
    IdentifiedAnnotation ia = new IdentifiedAnnotation(jcas);
    ia.setConditional(((IdentifiedAnnotation) goldAnnotation).getConditional());
    ia.setConfidence(((IdentifiedAnnotation) goldAnnotation).getConfidence());
    ia.setDiscoveryTechnique(((IdentifiedAnnotation)goldAnnotation).getDiscoveryTechnique());
    ia.setGeneric(((IdentifiedAnnotation) goldAnnotation).getGeneric());
    ia.setHistoryOf(((IdentifiedAnnotation) goldAnnotation).getHistoryOf());
    ia.setPolarity(((IdentifiedAnnotation) goldAnnotation).getPolarity());
    ia.setSegmentID(((IdentifiedAnnotation) goldAnnotation).getSegmentID());
    ia.setSentenceID(((IdentifiedAnnotation) goldAnnotation).getSentenceID());
    ia.setSubject(((IdentifiedAnnotation) goldAnnotation).getSubject());
    ia.setTypeID(((IdentifiedAnnotation) goldAnnotation).getTypeID());
    ia.setUncertainty(((IdentifiedAnnotation) goldAnnotation).getUncertainty());
    newAnno = ia;
  } else {
    throw new RuntimeException("Unexpected class of object " + goldAnnotation.getClass());
  }
  newAnno.setBegin(goldAnnotation.getBegin());
  newAnno.setEnd(goldAnnotation.getEnd());
  newAnno.addToIndexes();
  
}

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