outofmemoryerror在flink中执行连接操作时出错

siv3szwd  于 2021-06-21  发布在  Flink
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我们正在使用apache beam将一条清管器管道转换为flink。清管器管道从hdfs读取两个不同的数据集(r1和r2),对它们进行充实、连接并转储回hdfs。数据集r1是倾斜的。从某种意义上说,它只有很少的键和很多记录。当我们将清管器管道转换为apache beam并在生产Yarn集群上使用flink运行它时,我们得到以下错误

2018-11-21 16:52:25,307 ERROR org.apache.flink.runtime.operators.BatchTask                  - Error in task code:  GroupReduce (GroupReduce at CoGBK/GBK) (25/100)
java.lang.RuntimeException: Emitting the record caused an I/O exception: Failed to serialize element. Serialized size (> 1136656562 bytes) exceeds JVM heap space
        at org.apache.flink.runtime.operators.shipping.OutputCollector.collect(OutputCollector.java:69)
        at org.apache.flink.runtime.operators.util.metrics.CountingCollector.collect(CountingCollector.java:35)
        at org.apache.beam.runners.flink.translation.functions.SortingFlinkCombineRunner.combine(SortingFlinkCombineRunner.java:140)
        at org.apache.beam.runners.flink.translation.functions.FlinkReduceFunction.reduce(FlinkReduceFunction.java:85)
        at org.apache.flink.api.java.operators.translation.PlanUnwrappingReduceGroupOperator$TupleUnwrappingNonCombinableGroupReducer.reduce(PlanUnwrappingReduceGroupOperator.java:111)
        at org.apache.flink.runtime.operators.GroupReduceDriver.run(GroupReduceDriver.java:131)
        at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:503)
        at org.apache.flink.runtime.operators.BatchTask.invoke(BatchTask.java:368)
        at org.apache.flink.runtime.taskmanager.Task.run(Task.java:711)
        at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.IOException: Failed to serialize element. Serialized size (> 1136656562 bytes) exceeds JVM heap space
        at org.apache.flink.core.memory.DataOutputSerializer.resize(DataOutputSerializer.java:323)
        at org.apache.flink.core.memory.DataOutputSerializer.write(DataOutputSerializer.java:149)
        at org.apache.beam.runners.flink.translation.wrappers.DataOutputViewWrapper.write(DataOutputViewWrapper.java:48)
        at java.io.DataOutputStream.write(DataOutputStream.java:107)
        at java.io.ObjectOutputStream$BlockDataOutputStream.drain(ObjectOutputStream.java:1877)
        at java.io.ObjectOutputStream$BlockDataOutputStream.setBlockDataMode(ObjectOutputStream.java:1786)
        at java.io.ObjectOutputStream.writeNonProxyDesc(ObjectOutputStream.java:1286)
        at java.io.ObjectOutputStream.writeClassDesc(ObjectOutputStream.java:1231)
        at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1427)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
        at java.io.ObjectOutputStream.writeFatalException(ObjectOutputStream.java:1577)
        at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:351)
        at org.apache.beam.sdk.coders.SerializableCoder.encode(SerializableCoder.java:170)
        at org.apache.beam.sdk.coders.SerializableCoder.encode(SerializableCoder.java:50)
        at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
        at org.apache.beam.sdk.transforms.join.UnionCoder.encode(UnionCoder.java:71)
        at org.apache.beam.sdk.transforms.join.UnionCoder.encode(UnionCoder.java:58)
        at org.apache.beam.sdk.transforms.join.UnionCoder.encode(UnionCoder.java:32)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:98)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:60)
        at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
        at org.apache.beam.sdk.coders.KvCoder.encode(KvCoder.java:71)
        at org.apache.beam.sdk.coders.KvCoder.encode(KvCoder.java:36)
        at org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.encode(WindowedValue.java:529)
        at org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.encode(WindowedValue.java:520)
        at org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.encode(WindowedValue.java:480)
        at org.apache.beam.runners.flink.translation.types.CoderTypeSerializer.serialize(CoderTypeSerializer.java:83)
        at org.apache.flink.runtime.plugable.SerializationDelegate.write(SerializationDelegate.java:54)
        at org.apache.flink.runtime.io.network.api.serialization.SpanningRecordSerializer.addRecord(SpanningRecordSerializer.java:88)
        at org.apache.flink.runtime.io.network.api.writer.RecordWriter.sendToTarget(RecordWriter.java:131)
        at org.apache.flink.runtime.io.network.api.writer.RecordWriter.emit(RecordWriter.java:107)
        at org.apache.flink.runtime.operators.shipping.OutputCollector.collect(OutputCollector.java:65)
        ... 9 more
Caused by: java.lang.OutOfMemoryError: Java heap space
        at org.apache.flink.core.memory.DataOutputSerializer.resize(DataOutputSerializer.java:305)
        at org.apache.flink.core.memory.DataOutputSerializer.write(DataOutputSerializer.java:149)
        at org.apache.beam.runners.flink.translation.wrappers.DataOutputViewWrapper.write(DataOutputViewWrapper.java:48)
        at java.io.DataOutputStream.write(DataOutputStream.java:107)
        at java.io.ObjectOutputStream$BlockDataOutputStream.drain(ObjectOutputStream.java:1877)
        at java.io.ObjectOutputStream$BlockDataOutputStream.setBlockDataMode(ObjectOutputStream.java:1786)
        at java.io.ObjectOutputStream.writeNonProxyDesc(ObjectOutputStream.java:1286)
        at java.io.ObjectOutputStream.writeClassDesc(ObjectOutputStream.java:1231)
        at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1427)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
        at java.io.ObjectOutputStream.writeFatalException(ObjectOutputStream.java:1577)
        at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:351)
        at org.apache.beam.sdk.coders.SerializableCoder.encode(SerializableCoder.java:170)
        at org.apache.beam.sdk.coders.SerializableCoder.encode(SerializableCoder.java:50)
        at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
        at org.apache.beam.sdk.transforms.join.UnionCoder.encode(UnionCoder.java:71)
        at org.apache.beam.sdk.transforms.join.UnionCoder.encode(UnionCoder.java:58)
        at org.apache.beam.sdk.transforms.join.UnionCoder.encode(UnionCoder.java:32)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:98)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:60)
        at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
        at org.apache.beam.sdk.coders.KvCoder.encode(KvCoder.java:71)
        at org.apache.beam.sdk.coders.KvCoder.encode(KvCoder.java:36)
        at org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.encode(WindowedValue.java:529)
        at org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.encode(WindowedValue.java:520)
        at org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.encode(WindowedValue.java:480)
        at org.apache.beam.runners.flink.translation.types.CoderTypeSerializer.serialize(CoderTypeSerializer.java:83)
        at org.apache.flink.runtime.plugable.SerializationDelegate.write(SerializationDelegate.java:54)
        at org.apache.flink.runtime.io.network.api.serialization.SpanningRecordSerializer.addRecord(SpanningRecordSerializer.java:88)
        at org.apache.flink.runtime.io.network.api.writer.RecordWriter.sendToTarget(RecordWriter.java:131)
        at org.apache.flink.runtime.io.network.api.writer.RecordWriter.emit(RecordWriter.java:107)
        at org.apache.flink.runtime.operators.shipping.OutputCollector.collect(OutputCollector.java:65)

从flink作业管理器 Jmeter 板中的异常视图中,我们可以看到这是在连接操作中发生的。
当我说r1数据集是倾斜的时,有些键的出现次数高达8000000次,而大多数键只出现一次。数据集r2的记录的键最多出现一次。
另外,如果我们排除了出现次数较多的键,那么管道运行完全正常,这证明了它的发生仅仅是由于这几个键。
hadoop版本:2.7.1 beam版本:2.8.0 flink runner版本:2.8.0
让我知道什么更多的信息,我应该获取和张贴在这里,以便您帮助我解决这个问题。

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