org.biomart.martservice.query.Query.getAttributes()方法的使用及代码示例

x33g5p2x  于2022-01-28 转载在 其他  
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本文整理了Java中org.biomart.martservice.query.Query.getAttributes方法的一些代码示例,展示了Query.getAttributes的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。Query.getAttributes方法的具体详情如下:
包路径:org.biomart.martservice.query.Query
类名称:Query
方法名:getAttributes

Query.getAttributes介绍

暂无

代码示例

代码示例来源:origin: net.sf.taverna.t2.activities/biomart-activity

private void buildOutputPorts(List<Edit<?>> editList) {
  Map<String, OutputPort> newOutputMap = new HashMap<String, OutputPort>();
  Query query = biomartQuery.getQuery();
  List<Attribute> attributes = query.getAttributes();
  String formatter = query.getFormatter();
  if (formatter == null) {

代码示例来源:origin: net.sf.taverna.t2/biomart-activity

private void buildOutputPorts() {
  Query query = biomartQuery.getQuery();
  List<Attribute> attributes = query.getAttributes();
  String formatter = query.getFormatter();
  if (formatter == null) {
    // Create new output ports corresponding to attributes
    for (Attribute attribute : attributes) {
      String name = attribute.getQualifiedName();
      if (attribute.getAttributes() != null) {
        addOutput(name, 2, STREAM_RESULTS?1:2);
      } else {
        addOutput(name, 1, STREAM_RESULTS?0:1);
      }
    }
  } else if (attributes.size() > 0) {
    // create one port using the dataset name
    Attribute attribute = attributes.get(0);
    String name = attribute.getContainingDataset().getName();
    addOutput(name, 0, 0);
  }
}

代码示例来源:origin: uk.org.mygrid.taverna.processors/taverna-biomart-processor

private void buildOutputPortsFromQuery() throws PortCreationException,
    DuplicatePortNameException {
  List<Attribute> attributes = query.getQuery().getAttributes();
  Set<String> attributeNames = new HashSet<String>();
  String formatter = query.getQuery().getFormatter();

代码示例来源:origin: net.sf.taverna.t2.activities/biomart-activity-ui

@Override
protected String getRawTableRowsHtml() {
  MartQuery q = MartServiceXMLHandler.elementToMartQuery(getConfigBean(), null);
  String html="<tr><td>URL</td><td>"+q.getMartService().getLocation()+"</td></tr>";
  html+="<tr><td>Location</td><td>"+q.getMartDataset().getMartURLLocation().getDisplayName() + "</td></tr>";
  boolean firstFilter=true;
  for (Filter filter : q.getQuery().getFilters()) {
    html+=firstFilter ? "<tr><td>Filter</td><td>" : "<tr><td></td></td>";
    firstFilter=false;
    html+=filter.getName()+"</td></tr>";
  }
  boolean firstAttribute=true;
  for (Attribute attribute : q.getQuery().getAttributes()) {
    html+=firstAttribute ? "<tr><td>Attribute</td><td>" : "<tr><td></td><td>";
    firstAttribute=false;
    html+=attribute.getName()+"</td></tr>";
  }
  html+="<tr><td>Dataset</td><td>"+q.getMartDataset().getDisplayName()+"</td></tr>";
  return html;
}

代码示例来源:origin: net.sf.taverna.t2.ui-activities/biomart-activity-ui

@Override
protected String getRawTableRowsHtml() {
  MartQuery q = MartServiceXMLHandler.elementToMartQuery(getConfigBean(), null);
  String html="<tr><td>URL</td><td>"+q.getMartService().getLocation()+"</td></tr>";
  html+="<tr><td>Location</td><td>"+q.getMartDataset().getMartURLLocation().getDisplayName() + "</td></tr>";
  boolean firstFilter=true;
  for (Filter filter : q.getQuery().getFilters()) {
    html+=firstFilter ? "<tr><td>Filter</td><td>" : "<tr><td></td></td>";
    firstFilter=false;
    html+=filter.getName()+"</td></tr>";
  }
  boolean firstAttribute=true;
  for (Attribute attribute : q.getQuery().getAttributes()) {
    html+=firstAttribute ? "<tr><td>Attribute</td><td>" : "<tr><td></td><td>";
    firstAttribute=false;
    html+=attribute.getName()+"</td></tr>";
  }
  html+="<tr><td>Dataset</td><td>"+q.getMartDataset().getDisplayName()+"</td></tr>";
  return html;
}

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