uk.ac.ebi.intact.model.Annotation.getAnnotationText()方法的使用及代码示例

x33g5p2x  于2022-01-16 转载在 其他  
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本文整理了Java中uk.ac.ebi.intact.model.Annotation.getAnnotationText()方法的一些代码示例，展示了Annotation.getAnnotationText()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Annotation.getAnnotationText()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Annotation
类名称：Annotation
方法名：getAnnotationText

Annotation.getAnnotationText介绍

暂无

代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

private Collection<String> convertAnnotToString(Collection<Annotation> annot){
  Collection<String> annotations = new ArrayList<String>(annot.size());
  for (Annotation a : annot){
     if (a.getCvTopic() == null){
       annotations.add(a.getAnnotationText() != null ? a.getAnnotationText() : "");
     }
    else {
       annotations.add(a.getCvTopic().getShortLabel() + (a.getAnnotationText() != null ? a.getAnnotationText() : ""));
     }
  }
  return annotations;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

private Collection<String> convertAnnotToString(Collection<Annotation> annot){
  Collection<String> annotations = new ArrayList<String>(annot.size());
  for (Annotation a : annot){
     if (a.getCvTopic() == null){
       annotations.add(a.getAnnotationText() != null ? a.getAnnotationText() : "");
     }
    else {
       annotations.add(a.getCvTopic().getShortLabel() + (a.getAnnotationText() != null ? a.getAnnotationText() : ""));
     }
  }
  return annotations;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

@Transient
@Deprecated
/**
 * @deprecated now it is always stored as a simple annotation
 */
public String getUrl() {
  Annotation annot = AnnotatedObjectUtils.findAnnotationByTopicMiOrLabel(this, CvTopic.URL_MI_REF);
  return annot != null ? annot.getAnnotationText() : null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

@Transient
@Deprecated
/**
 * @deprecated now it is always stored as a simple annotation
 */
public String getPostalAddress() {
  Annotation annot = AnnotatedObjectUtils.findAnnotationByTopicMiOrLabel(this, "postaladdress");
  return annot != null ? annot.getAnnotationText() : null;
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psimitab-converters

public String extractStandardInchiKeyFrom(SmallMolecule interactor) {

    // find INCHI key
    final Annotation annotation = AnnotatedObjectUtils.findAnnotationByTopicMiOrLabel(interactor, INCHI_MI_REF);// INCHI_MI_REF

    if (annotation != null){
      return  annotation.getAnnotationText();
    }

    return null;
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

@Transient
@Deprecated
/**
 * @deprecated now it is always stored as a simple annotation
 */
public String getUrl() {
  Annotation annot = AnnotatedObjectUtils.findAnnotationByTopicMiOrLabel(this, CvTopic.URL_MI_REF);
  return annot != null ? annot.getAnnotationText() : null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

@Transient
@Deprecated
/**
 * @deprecated now it is always stored as a simple annotation
 */
public String getPostalAddress() {
  Annotation annot = AnnotatedObjectUtils.findAnnotationByTopicMiOrLabel(this, "postaladdress");
  return annot != null ? annot.getAnnotationText() : null;
}

代码示例来源：origin: uk.ac.ebi.intact.bridges.coredep/intact-cdb

private static String getAnnotationValue(Experiment experiment, CvTopic topic) {
  for (Annotation annotation : experiment.getAnnotations()) {
    if (topic.equals(annotation.getCvTopic())) {
      return annotation.getAnnotationText();
    }
  }
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.dbupdate/intact-update-model

public UpdatedAnnotation(Annotation annotation, UpdateStatus status){
  super();
  if (annotation != null){
    topic = annotation.getCvTopic() != null ? annotation.getCvTopic().getAc() : null;
    this.text = annotation.getAnnotationText();
  }
  else {
    this.topic = null;
    this.text = null;
  }
  this.status = status != null ? status : UpdateStatus.none;
  this.parent = null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

@Override
public void visitAnnotation(Annotation annotation) {
  currentNode.setUserObject("Annotation: "+annotation.getAnnotationText()+" / Topic="+ DebugUtil.cvObjectToSimpleString(annotation.getCvTopic()));
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

@Override
public void visitAnnotation(Annotation annotation) {
  currentNode.setUserObject("Annotation: "+annotation.getAnnotationText()+" / Topic="+ DebugUtil.cvObjectToSimpleString(annotation.getCvTopic()));
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public static boolean sameAnnotation( Annotation a1, Annotation a2 ) {
  if (a1.getAc() != null && a2.getAc() != null) {
    return a1.getAc().equals(a2.getAc());
  }
  if ( !same( a1.getAnnotationText(), a2.getAnnotationText() ) ) {
    return false;
  }
  if ( !CvObjectUtils.areEqual( a1.getCvTopic(), a2.getCvTopic() ) ) {
    return false;
  }
  return true;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public static boolean sameAnnotation( Annotation a1, Annotation a2 ) {
  if (a1.getAc() != null && a2.getAc() != null) {
    return a1.getAc().equals(a2.getAc());
  }
  if ( !same( a1.getAnnotationText(), a2.getAnnotationText() ) ) {
    return false;
  }
  if ( !CvObjectUtils.areEqual( a1.getCvTopic(), a2.getCvTopic() ) ) {
    return false;
  }
  return true;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

private static String getAnnotationById(InteractionImpl complex, String id) {
  for (Annotation annotation : complex.getAnnotations()) {
    if (annotation.getCvTopic() != null && annotation.getCvTopic().getIdentifier() != null && annotation.getCvTopic().getIdentifier().equalsIgnoreCase(id)) {
      return annotation.getAnnotationText();
    }
  }
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Key keyForAnnotation(Annotation annotation, AnnotatedObject parent) {
  return new Key(keyFor(parent).getUniqueString() + "::" + annotation.getCvTopic() + "_" + annotation.getAnnotationText());
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

private static String getAnnotationById(InteractionImpl complex, String id) {
  for (Annotation annotation : complex.getAnnotations()) {
    if (annotation.getCvTopic() != null && annotation.getCvTopic().getIdentifier() != null && annotation.getCvTopic().getIdentifier().equalsIgnoreCase(id)) {
      return annotation.getAnnotationText();
    }
  }
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

private static String getAnnotationByShortLabel(InteractionImpl complex, String shortLabel) {
  for (Annotation annotation : complex.getAnnotations()) {
    if (annotation.getCvTopic() != null && annotation.getCvTopic().getShortLabel() != null && annotation.getCvTopic().getShortLabel().equalsIgnoreCase(shortLabel)) {
      return annotation.getAnnotationText();
    }
  }
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

private static String getAnnotationByShortLabel(InteractionImpl complex, String shortLabel) {
  for (Annotation annotation : complex.getAnnotations()) {
    if (annotation.getCvTopic() != null && annotation.getCvTopic().getShortLabel() != null && annotation.getCvTopic().getShortLabel().equalsIgnoreCase(shortLabel)) {
      return annotation.getAnnotationText();
    }
  }
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected Annotation cloneAnnotation(Annotation annotation) throws IntactClonerException {
  if (annotation == null) return null;
  Annotation clone = new Annotation();
  clonerManager.addClone(annotation, clone);
  clone.setCvTopic(clone(annotation.getCvTopic()));
  clone.setAnnotationText(annotation.getAnnotationText());
  return clone;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected Annotation cloneAnnotation(Annotation annotation) throws IntactClonerException {
  if (annotation == null) return null;
  Annotation clone = new Annotation();
  clonerManager.addClone(annotation, clone);
  clone.setCvTopic(clone(annotation.getCvTopic()));
  clone.setAnnotationText(annotation.getAnnotationText());
  return clone;
}

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