本文整理了Java中org.broadinstitute.gatk.utils.sam.GATKSAMRecord.setBaseQualityString()方法的一些代码示例，展示了GATKSAMRecord.setBaseQualityString()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。GATKSAMRecord.setBaseQualityString()方法的具体详情如下：
包路径：org.broadinstitute.gatk.utils.sam.GATKSAMRecord
类名称：GATKSAMRecord
方法名：setBaseQualityString

GATKSAMRecord.setBaseQualityString介绍

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代码示例

代码示例来源：origin: broadgsa/gatk

@BeforeClass
public void init() {
  SAMFileHeader header = ArtificialSAMUtils.createArtificialSamHeader(1, 1, 1000);
  read = ArtificialSAMUtils.createArtificialRead(header, "read1", 0, 1, BASES.length());
  read.setReadUnmappedFlag(true);
  read.setReadBases(new String(BASES).getBytes());
  read.setBaseQualityString(new String(QUALS));
}

代码示例来源：origin: broadgsa/gatk

protected GATKSAMRecord buildSAMRecord(final String readName, final String contig, final int alignmentStart) {
  GATKSAMRecord record = new GATKSAMRecord(header);
  record.setReadName(readName);
  record.setReferenceIndex(dictionary.getSequenceIndex(contig));
  record.setAlignmentStart(alignmentStart);
  record.setCigarString("1M");
  record.setReadString("A");
  record.setBaseQualityString("A");
  record.setReadGroup(readGroup);
  return record;
}