本文整理了Java中org.broadinstitute.gatk.utils.sam.GATKSAMRecord.setIsStrandless()方法的一些代码示例，展示了GATKSAMRecord.setIsStrandless()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。GATKSAMRecord.setIsStrandless()方法的具体详情如下：
包路径：org.broadinstitute.gatk.utils.sam.GATKSAMRecord
类名称：GATKSAMRecord
方法名：setIsStrandless

GATKSAMRecord.setIsStrandless介绍

[英]Set the strandless state of this read to isStrandless
[中]将此读取的无限制状态设置为isStrandless

代码示例

代码示例来源：origin: broadgsa/gatk

@Test(expectedExceptions = IllegalStateException.class)
  public void testStrandlessReadsFailSetStrand() {
    final byte [] bases = {'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'};
    final byte [] quals = {20 , 20 , 20 , 20 , 20 , 20 , 20 , 20 };
    GATKSAMRecord read = ArtificialSAMUtils.createArtificialRead(bases, quals, "6M");
    read.setIsStrandless(true);
    read.setReadNegativeStrandFlag(true);
  }
}

代码示例来源：origin: broadgsa/gatk

@Test
public void testStrandlessReads() {
  final byte [] bases = {'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'};
  final byte [] quals = {20 , 20 , 20 , 20 , 20 , 20 , 20 , 20 };
  GATKSAMRecord read = ArtificialSAMUtils.createArtificialRead(bases, quals, "6M");
  Assert.assertEquals(read.isStrandless(), false);
  read.setReadNegativeStrandFlag(false);
  Assert.assertEquals(read.isStrandless(), false);
  Assert.assertEquals(read.getReadNegativeStrandFlag(), false);
  read.setReadNegativeStrandFlag(true);
  Assert.assertEquals(read.isStrandless(), false);
  Assert.assertEquals(read.getReadNegativeStrandFlag(), true);
  read.setReadNegativeStrandFlag(true);
  read.setIsStrandless(true);
  Assert.assertEquals(read.isStrandless(), true);
  Assert.assertEquals(read.getReadNegativeStrandFlag(), false, "negative strand flag should return false even through its set for a strandless read");
}

代码示例来源：origin: broadgsa/gatk

returnRead.setIsStrandless(true);
returnRead.setAlignmentStart( firstRead.getAlignmentStart() );
returnRead.setReadBases( bases );

代码示例来源：origin: broadgsa/gatk-protected

correctedRead.setIsStrandless(inputRead.isStrandless());
correctedRead.setReadBases(inputRead.getReadBases());
correctedRead.setReadString(inputRead.getReadString());