本文整理了Java中org.broadinstitute.gatk.utils.sam.GATKSAMRecord.format()方法的一些代码示例，展示了GATKSAMRecord.format()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。GATKSAMRecord.format()方法的具体详情如下：
包路径：org.broadinstitute.gatk.utils.sam.GATKSAMRecord
类名称：GATKSAMRecord
方法名：format

GATKSAMRecord.format介绍

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代码示例

代码示例来源：origin: broadgsa/gatk

public ClippingData reduce(ReadClipperWithData clipper, ClippingData data) {
  if ( clipper == null )
    return data;
  GATKSAMRecord clippedRead = clipper.clipRead(clippingRepresentation);
  if (outputBam != null) {
    outputBam.addAlignment(clippedRead);
  } else {
    out.println(clippedRead.format());
  }
  data.nTotalReads++;
  data.nTotalBases += clipper.getRead().getReadLength();
  if (clipper.wasClipped()) {
    data.nClippedReads++;
    data.addData(clipper.getData());
  }
  return data;
}

代码示例来源：origin: broadgsa/gatk

+ " != read length " + read.getReadLength() + " for read " + read.format() + "\nhapToRef " + haplotypeToRef + " length " + haplotypeToRef.getReadLength() + "/" + haplotypeToRef.getReferenceLength()
+ "\nreadToHap " + swCigar + " length " + swCigar.getReadLength() + "/" + swCigar.getReferenceLength());