org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils.parseFormat()方法的使用及代码示例

x33g5p2x  于2022-02-01 转载在 其他  
字(2.2k)|赞(0)|评价(0)|浏览(54)

本文整理了Java中org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils.parseFormat()方法的一些代码示例,展示了VariantQueryUtils.parseFormat()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。VariantQueryUtils.parseFormat()方法的具体详情如下:
包路径:org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils
类名称:VariantQueryUtils
方法名:parseFormat

VariantQueryUtils.parseFormat介绍

[英]Parse FORMAT param.
[中]解析格式参数。

代码示例

代码示例来源:origin: opencb/opencga

protected void checkParseFormat(Query query, QueryOperation expectedOperation, String ...expected) {
  Pair<QueryOperation, Map<String, String>> pair = parseFormat(query);
  QueryOperation operation = pair.getKey();
  Map<String, String> map = pair.getValue();
  HashMap<String, String> expectedMap = new HashMap<>();
  for (int i = 0; i < expected.length; i+=2) {
    expectedMap.put(expected[i], expected[i + 1]);
  }
  assertEquals(expectedMap, map);
  assertEquals(expectedOperation, operation);
}

代码示例来源:origin: opencb/opencga

private void addFormatFilter(Query query, List<String> filters, StudyConfiguration defaultStudyConfiguration) {
  Pair<QueryOperation, Map<String, String>> pair = VariantQueryUtils.parseFormat(query);
  QueryOperation formatOperation = pair.getKey();
  Map<String, String> formatValuesMap = pair.getValue();

代码示例来源:origin: opencb/opencga

public static Query extractGenotypeFromFormatFilter(Query query) {
  Pair<QueryOperation, Map<String, String>> formatPair = parseFormat(query);

代码示例来源:origin: opencb/opencga

Map<String, String> formatMap = parseFormat(query).getValue();
if (samples == null) {
  samples = new ArrayList<>(formatMap.size());

代码示例来源:origin: opencb/opencga

Pair<QueryOperation, Map<String, String>> parsedSampleFormats = VariantQueryUtils.parseFormat(query);
String logicOpStr = parsedSampleFormats.getKey() == QueryOperation.AND ? " AND " : " OR ";
StringBuilder sb = new StringBuilder();

代码示例来源:origin: opencb/opencga

if (isValidParam(query, VariantQueryParam.FORMAT)) {
  validFormatFilter = true;
  formatMap = parseFormat(query).getValue();

代码示例来源:origin: opencb/opencga

extractGenotypeFromFormatFilter(query);
Pair<QueryOperation, Map<String, String>> pair = parseFormat(query);
formatOperator = pair.getKey();

相关文章

微信公众号

最新文章

更多