org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils.parseXrefs()方法的使用及代码示例

x33g5p2x  于2022-02-01 转载在 其他  
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本文整理了Java中org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils.parseXrefs()方法的一些代码示例,展示了VariantQueryUtils.parseXrefs()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。VariantQueryUtils.parseXrefs()方法的具体详情如下:
包路径:org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils
类名称:VariantQueryUtils
方法名:parseXrefs

VariantQueryUtils.parseXrefs介绍

[英]Parses XREFS related filters, and sorts in different lists. - VariantQueryParam#ID- VariantQueryParam#GENE- VariantQueryParam#ANNOT_XREF- VariantQueryParam#ANNOT_CLINVAR- VariantQueryParam#ANNOT_COSMIC
[中]解析与外部参照相关的过滤器,并在不同的列表中排序。-VariantQueryParam#ID-VariantQueryParam#GENE-VariantQueryParam#ANNOT#外部参照-VariantQueryParam#ANNOT#CLINVAR-VariantQueryParam#ANNOT#

代码示例

代码示例来源:origin: opencb/opencga

public static void convertGenesToRegionsQuery(Query query, CellBaseUtils cellBaseUtils) {
  VariantQueryXref variantQueryXref = VariantQueryUtils.parseXrefs(query);
  List<String> genes = variantQueryXref.getGenes();
  if (!genes.isEmpty()) {
    List<Region> regions = cellBaseUtils.getGeneRegion(genes);
    regions = mergeRegions(regions);
    query.put(ANNOT_GENE_REGIONS.key(), regions);
  }
}

代码示例来源:origin: opencb/opencga

VariantQueryUtils.VariantQueryXref xref = VariantQueryUtils.parseXrefs(query);
if (!xref.getIds().isEmpty() || !xref.getVariants().isEmpty() || !xref.getOtherXrefs().isEmpty()) {

代码示例来源:origin: opencb/opencga

VariantQueryXref variantQueryXref = VariantQueryUtils.parseXrefs(query);

代码示例来源:origin: opencb/opencga

public List<Scan> parseQueryMultiRegion(SelectVariantElements selectElements, Query query, QueryOptions options) {
  VariantQueryXref xrefs = VariantQueryUtils.parseXrefs(query);
  if (!xrefs.getOtherXrefs().isEmpty()) {
    throw VariantQueryException.unsupportedVariantQueryFilter(VariantQueryParam.ANNOT_XREF,

代码示例来源:origin: opencb/opencga

VariantQueryXref variantQueryXref = VariantQueryUtils.parseXrefs(query);

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