org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils.splitStudyResource()方法的使用及代码示例

x33g5p2x  于2022-02-01 转载在 其他  
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本文整理了Java中org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils.splitStudyResource()方法的一些代码示例,展示了VariantQueryUtils.splitStudyResource()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。VariantQueryUtils.splitStudyResource()方法的具体详情如下:
包路径:org.opencb.opencga.storage.core.variant.adaptors.VariantQueryUtils
类名称:VariantQueryUtils
方法名:splitStudyResource

VariantQueryUtils.splitStudyResource介绍

暂无

代码示例

代码示例来源:origin: opencb/opencga

private BiFunction<String[], String, Column> getStatsColumnParser(StudyConfiguration defaultStudyConfiguration,
                                 BiFunction<Integer, Integer, Column> columnBuilder) {
  return (keyOpValue, v) -> {
    String key = keyOpValue[0];
    String[] split = VariantQueryUtils.splitStudyResource(key);
    String cohort;
    final StudyConfiguration sc;
    if (split.length == 2) {
      String study = split[0];
      cohort = split[1];
      sc = studyConfigurationManager.getStudyConfiguration(study, defaultStudyConfiguration, null);
    } else {
      cohort = key;
      sc = defaultStudyConfiguration;
    }
    int cohortId = studyConfigurationManager.getCohortId(cohort, sc);
    return columnBuilder.apply(sc.getStudyId(), cohortId);
  };
}

代码示例来源:origin: opencb/opencga

id = Integer.parseInt(str);
} else {
  String[] split = VariantQueryUtils.splitStudyResource(str);
  if (split.length == 2) {
    String study = split[0];

代码示例来源:origin: opencb/opencga

negated = true;
String[] studyCohort = splitStudyResource(cohort);
StudyConfiguration studyConfiguration;
if (studyCohort.length == 2) {

代码示例来源:origin: opencb/opencga

sampleId = Integer.parseInt(sampleStr);
} else {
  String[] split = VariantQueryUtils.splitStudyResource(sampleStr);
  if (split.length == 2) {  //Expect to be as <study>:<sample>
    String study = split[0];

代码示例来源:origin: opencb/opencga

String[] studyFile = VariantQueryUtils.splitStudyResource(fileStr);
if (studyFile.length == 2) {
  String study = studyFile[0];

代码示例来源:origin: opencb/opencga

return Integer.parseInt(s);
} catch (NumberFormatException ignore) {
  String[] split = VariantQueryUtils.splitStudyResource(s);
  if (defaultStudyConfiguration == null && split.length == 1) {
    throw VariantQueryException.malformedParam(COHORT, s, "Expected {study}:{cohort}");

代码示例来源:origin: opencb/opencga

String[] studyValue = VariantQueryUtils.splitStudyResource(filter);
if (studyValue.length == 2 || defaultStudyConfiguration != null) {
  Integer studyId;

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